PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_001071-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 542aa    MW: 58260.8 Da    PI: 5.631
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_001071-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.7e-09358406355
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  NNU_001071-RA 358 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 406
                    58*************************9....556*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.09E-11353410No hitNo description
SuperFamilySSF474597.2E-17353424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485355405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16356422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-6358406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10361411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MDMGDKDKFG LEKGSGDPVN YHSSNMSTDW RFGGANISNQ SMGLVPTDNS IPVRKGDLMG  60
SSVSLVNSFC PTIWDHPNSL NLGFCDSNAQ TGTNTSNTVA IRKGIPVCSS TSIDKALDIG  120
WNPTISKGGV FLQSNTGIIP QSLSQFPADA DFIERAARFS CFNAGNFSDM MNPFSIPQTL  180
VPYSKGGTVQ APIQNNEMHL PEAAKEVTPS ADHGATEGNP IENERQTGNF MRHPDEEKQG  240
IGVSSNESDE ADFSGSGDGQ GDPSMLESAG GDPSSSKGIS IKKRKRSGQD NELDQVKGAQ  300
VPGEGAKDNT ETKQKGDQNL TSATAKPAGK HGKDSSQPSD APKEDYIHVR ARRGQATNSH  360
SLAERVRREK ISERMKFLQD LVPGCSKVTG KAVMLDEIIN YVQSLQRQVE FLSMKLAAVN  420
PRLDFNIEGF LAKDILQARG GSSTMGFSPD MGMSHPQLHP SQQGLIQAGI PGMGSPSDAL  480
RRTINSQLTA MSGGYKEPTQ LPNMWVDDEL HNVVQMNYGA SVPFNNQELN GSLPPGHMKV  540
EL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1281286KKRKRS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010261463.10.0PREDICTED: transcription factor bHLH49
RefseqXP_010261471.10.0PREDICTED: transcription factor bHLH49
RefseqXP_010261481.10.0PREDICTED: transcription factor bHLH49
TrEMBLM5XLG40.0M5XLG4_PRUPE; Uncharacterized protein
STRINGPOPTR_0010s14600.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-105bHLH family protein